Artur Meski
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753b217721
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Printing of reactions
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2018-03-28 18:58:59 +01:00 |
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Artur Meski
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99fbed638c
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Reactions organised by process
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2018-03-28 18:11:00 +01:00 |
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Artur Meski
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179c199ece
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Processes, switching
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2018-03-28 15:35:48 +01:00 |
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Artur Meski
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91ccf628f5
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Example for CA
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2018-03-27 18:31:40 +01:00 |
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Artur Meski
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ae740fa885
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PV vectors for global state with CA, states printing (resolved an issue with duplicates)
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2018-03-27 18:19:06 +01:00 |
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Artur Meski
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c74d4bdd0c
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Context automaton works with RS
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2018-03-27 15:41:50 +01:00 |
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Artur Meski
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1f01dce3cc
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Formatting, initial state encoding
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2018-03-26 22:29:11 +01:00 |
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Artur Meski
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03cbf26afa
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Bugfixes
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2018-03-26 22:05:23 +01:00 |
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Artur Meski
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76ab891786
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Transition relation encoding
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2018-03-26 21:37:43 +01:00 |
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Artur Meski
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32fdad662b
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CtxAutTransition(s), renaming
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2018-03-26 19:42:14 +01:00 |
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Artur Meski
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def86df597
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Doc
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2018-03-26 19:37:08 +01:00 |
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Artur Meski
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0c9665d1b6
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Typo
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2018-03-26 19:22:19 +01:00 |
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Artur Meski
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e3119099ea
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Context automaton state encoding
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2018-03-26 19:18:41 +01:00 |
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Artur Meski
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fa587e6f2a
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Started on encoding for CA
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2018-03-26 13:10:26 +01:00 |
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Artur Meski
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ee441ab390
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Types
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2018-03-26 11:00:23 +01:00 |
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Artur Meski
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44ea91c10e
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Types in separate file. Other stuff...
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2018-03-26 10:47:46 +01:00 |
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Artur Meski
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600f5c0daa
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Initial RS states vs initial CA states (they are incompatible)
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2018-03-04 19:46:09 +00:00 |
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Artur Meski
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f55d433791
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CA initial state
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2018-03-04 15:32:16 +00:00 |
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Artur Meski
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18004b916e
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CA input (done); initial state missing
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2018-03-03 22:38:51 +00:00 |
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Artur Meski
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c5b4dc91d9
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Working on CA
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2018-03-03 21:56:03 +00:00 |
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Artur Meski
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cf8c5df9ea
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CA files
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2018-03-03 21:55:43 +00:00 |
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Artur Meski
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c853e40ad7
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RS with context automaton (we embed CA with RS)
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2018-03-03 21:19:13 +00:00 |
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Artur Meski
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f121ce12fd
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Reaction system initialisation based on options.
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2018-02-25 19:47:00 +00:00 |
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Artur Meski
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abdb53ffd5
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Adding context automaton
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2018-02-18 15:40:59 +00:00 |
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Artur Meski
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f5a7d857c6
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CA parsing (without interpretation)
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2018-02-17 22:09:48 +00:00 |
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Artur Meski
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bd4b74703d
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Working on the parser for CA
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2018-02-17 21:26:11 +00:00 |
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Artur Meski
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9b41161f82
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Fixed bison warning
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2018-02-17 20:53:04 +00:00 |
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Artur Meski
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83e48eb08d
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Parser fixes
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2018-02-17 20:45:08 +00:00 |
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Artur Meski
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6dbdd586d6
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atom -> entity
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2018-02-17 17:09:17 +00:00 |
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Artur Meski
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ae01b78563
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Silencing flex-related warnings
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2018-02-17 16:54:57 +00:00 |
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Artur Meski
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218f5c7ecc
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gitignore: added .DS_Store
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2018-02-17 16:28:09 +00:00 |
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Artur Meski
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40fd6b80a6
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README update: deps
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2018-02-10 12:50:45 +00:00 |
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Artur Meski
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387aad0bd2
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Development build flags
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2018-02-10 12:49:56 +00:00 |
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Artur Meski
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1213321c3b
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Migrated to new CUDD (3.0.0) -- complete
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2018-02-10 12:48:42 +00:00 |
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Artur Meski
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e0eb9258b0
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Migrating to CUDD 3.0.0: Makefile
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2018-02-10 12:43:46 +00:00 |
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Artur Meski
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269f92aa73
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Migrating to CUDD 3.0.0
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2018-02-10 12:43:22 +00:00 |
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Artur Meski
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962350a517
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Merge branch 'master' of bitbucket.org:rsmodecking/rsmc
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2018-02-10 12:06:38 +00:00 |
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Artur Meski
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7fd7db2ba9
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cudd 3.0.0 source
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2018-02-10 12:05:45 +00:00 |
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Artur Meski
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4cdbaf000f
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New results
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2018-01-23 09:05:19 +00:00 |
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Artur Meski
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2a8766cb50
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Benchmarking script
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2018-01-22 21:01:16 +00:00 |
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Artur Meski
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a1a250d8b8
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Reviving the old encoding (to use the new multi-path rsLTL encoder)
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2018-01-22 20:55:02 +00:00 |
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Artur Meski
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707c150134
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Constraints for sanity of reactions (reactants vs. inhibitors: inh(e) => rct(e) < inh(e))
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2018-01-22 20:44:44 +00:00 |
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Artur Meski
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f970348b6b
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removing get_reactions_by_product
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2018-01-22 19:06:31 +00:00 |
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Artur Meski
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ca2ea3fa3f
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Removed constraint print... recursion
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2018-01-14 10:12:38 +00:00 |
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Artur Meski
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c2b877e38c
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Parametric results
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2018-01-14 10:11:48 +00:00 |
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Artur Meski
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52d39d3ebe
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Experiments: options, script
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2018-01-13 20:29:49 +00:00 |
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Artur Meski
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9ea443554d
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Benchmarks
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2018-01-07 22:45:41 +00:00 |
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Artur Meski
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f490c5e2b5
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Scaling parameter check
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2018-01-06 20:40:17 +00:00 |
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Artur Meski
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794d803c85
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version
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2018-01-06 20:39:46 +00:00 |
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Artur Meski
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bc2c3f3a3d
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Powerset limited to max two components
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2018-01-03 22:47:57 +00:00 |
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