Working on CA

rs.cc

@@ -181,11 +181,11 @@ void RctSys::printSystem(void)
 void RctSys::ctxAutEnable(void)
 {
 	assert(ctx_aut == nullptr);
-	ctx_aut = new CtxAut;
+	ctx_aut = new CtxAut(opts);
 }
 
 void RctSys::ctxAutAddState(std::string stateName)
 {
 	assert(ctx_aut != nullptr);
-	
+	ctx_aut->addState(stateName);
 }

rsin_driver.cc

@@ -94,3 +94,10 @@ RctSys *rsin_driver::getReactionSystem(void)
 	return rs;
 }
 
+void rsin_driver::useContextAutomaton(void)
+{
+	ensureOptionsAllowed(); 
+	use_ctx_aut = true; 
+	getReactionSystem()->ctxAutEnable();
+}
+

rsin_driver.hh

@@ -46,7 +46,7 @@ public:
     FormRSCTL *getFormRSCTL(void);
 
 	void ensureOptionsAllowed(void);
-	void useContextAutomaton(void)		{ ensureOptionsAllowed(); use_ctx_aut = true; getReactionSystem()->ctxAutEnable(); };
+	void useContextAutomaton(void);
 	void useConcentrations(void)		{ ensureOptionsAllowed(); use_concentrations = true; };
 	
 	void ensureReactionSystemReady(void);