Artur Meski
|
bac84bfe9a
|
Formatting
|
2018-03-29 17:02:55 +01:00 |
|
Artur Meski
|
212321c6cb
|
Parsing, printing... Context in CA
|
2018-03-29 17:01:28 +01:00 |
|
Artur Meski
|
38683e1041
|
Makefile update
|
2018-03-28 21:02:46 +01:00 |
|
Artur Meski
|
5f1a759c8f
|
Reformatting
|
2018-03-28 21:00:44 +01:00 |
|
Artur Meski
|
c90a87875a
|
Context automaton with augmented context: parsing
|
2018-03-28 20:46:19 +01:00 |
|
Artur Meski
|
753b217721
|
Printing of reactions
|
2018-03-28 18:58:59 +01:00 |
|
Artur Meski
|
99fbed638c
|
Reactions organised by process
|
2018-03-28 18:11:00 +01:00 |
|
Artur Meski
|
179c199ece
|
Processes, switching
|
2018-03-28 15:35:48 +01:00 |
|
Artur Meski
|
91ccf628f5
|
Example for CA
|
2018-03-27 18:31:40 +01:00 |
|
Artur Meski
|
ae740fa885
|
PV vectors for global state with CA, states printing (resolved an issue with duplicates)
|
2018-03-27 18:19:06 +01:00 |
|
Artur Meski
|
c74d4bdd0c
|
Context automaton works with RS
|
2018-03-27 15:41:50 +01:00 |
|
Artur Meski
|
1f01dce3cc
|
Formatting, initial state encoding
|
2018-03-26 22:29:11 +01:00 |
|
Artur Meski
|
03cbf26afa
|
Bugfixes
|
2018-03-26 22:05:23 +01:00 |
|
Artur Meski
|
76ab891786
|
Transition relation encoding
|
2018-03-26 21:37:43 +01:00 |
|
Artur Meski
|
32fdad662b
|
CtxAutTransition(s), renaming
|
2018-03-26 19:42:14 +01:00 |
|
Artur Meski
|
def86df597
|
Doc
|
2018-03-26 19:37:08 +01:00 |
|
Artur Meski
|
0c9665d1b6
|
Typo
|
2018-03-26 19:22:19 +01:00 |
|
Artur Meski
|
e3119099ea
|
Context automaton state encoding
|
2018-03-26 19:18:41 +01:00 |
|
Artur Meski
|
fa587e6f2a
|
Started on encoding for CA
|
2018-03-26 13:10:26 +01:00 |
|
Artur Meski
|
ee441ab390
|
Types
|
2018-03-26 11:00:23 +01:00 |
|
Artur Meski
|
44ea91c10e
|
Types in separate file. Other stuff...
|
2018-03-26 10:47:46 +01:00 |
|
Artur Meski
|
600f5c0daa
|
Initial RS states vs initial CA states (they are incompatible)
|
2018-03-04 19:46:09 +00:00 |
|
Artur Meski
|
f55d433791
|
CA initial state
|
2018-03-04 15:32:16 +00:00 |
|
Artur Meski
|
18004b916e
|
CA input (done); initial state missing
|
2018-03-03 22:38:51 +00:00 |
|
Artur Meski
|
c5b4dc91d9
|
Working on CA
|
2018-03-03 21:56:03 +00:00 |
|
Artur Meski
|
cf8c5df9ea
|
CA files
|
2018-03-03 21:55:43 +00:00 |
|
Artur Meski
|
c853e40ad7
|
RS with context automaton (we embed CA with RS)
|
2018-03-03 21:19:13 +00:00 |
|
Artur Meski
|
f121ce12fd
|
Reaction system initialisation based on options.
|
2018-02-25 19:47:00 +00:00 |
|
Artur Meski
|
abdb53ffd5
|
Adding context automaton
|
2018-02-18 15:40:59 +00:00 |
|
Artur Meski
|
f5a7d857c6
|
CA parsing (without interpretation)
|
2018-02-17 22:09:48 +00:00 |
|
Artur Meski
|
bd4b74703d
|
Working on the parser for CA
|
2018-02-17 21:26:11 +00:00 |
|
Artur Meski
|
9b41161f82
|
Fixed bison warning
|
2018-02-17 20:53:04 +00:00 |
|
Artur Meski
|
83e48eb08d
|
Parser fixes
|
2018-02-17 20:45:08 +00:00 |
|
Artur Meski
|
6dbdd586d6
|
atom -> entity
|
2018-02-17 17:09:17 +00:00 |
|
Artur Meski
|
ae01b78563
|
Silencing flex-related warnings
|
2018-02-17 16:54:57 +00:00 |
|
Artur Meski
|
218f5c7ecc
|
gitignore: added .DS_Store
|
2018-02-17 16:28:09 +00:00 |
|
Artur Meski
|
40fd6b80a6
|
README update: deps
|
2018-02-10 12:50:45 +00:00 |
|
Artur Meski
|
387aad0bd2
|
Development build flags
|
2018-02-10 12:49:56 +00:00 |
|
Artur Meski
|
1213321c3b
|
Migrated to new CUDD (3.0.0) -- complete
|
2018-02-10 12:48:42 +00:00 |
|
Artur Meski
|
e0eb9258b0
|
Migrating to CUDD 3.0.0: Makefile
|
2018-02-10 12:43:46 +00:00 |
|
Artur Meski
|
269f92aa73
|
Migrating to CUDD 3.0.0
|
2018-02-10 12:43:22 +00:00 |
|
Artur Meski
|
962350a517
|
Merge branch 'master' of bitbucket.org:rsmodecking/rsmc
|
2018-02-10 12:06:38 +00:00 |
|
Artur Meski
|
7fd7db2ba9
|
cudd 3.0.0 source
|
2018-02-10 12:05:45 +00:00 |
|
Artur Meski
|
4cdbaf000f
|
New results
|
2018-01-23 09:05:19 +00:00 |
|
Artur Meski
|
2a8766cb50
|
Benchmarking script
|
2018-01-22 21:01:16 +00:00 |
|
Artur Meski
|
a1a250d8b8
|
Reviving the old encoding (to use the new multi-path rsLTL encoder)
|
2018-01-22 20:55:02 +00:00 |
|
Artur Meski
|
707c150134
|
Constraints for sanity of reactions (reactants vs. inhibitors: inh(e) => rct(e) < inh(e))
|
2018-01-22 20:44:44 +00:00 |
|
Artur Meski
|
f970348b6b
|
removing get_reactions_by_product
|
2018-01-22 19:06:31 +00:00 |
|
Artur Meski
|
ca2ea3fa3f
|
Removed constraint print... recursion
|
2018-01-14 10:12:38 +00:00 |
|
Artur Meski
|
c2b877e38c
|
Parametric results
|
2018-01-14 10:11:48 +00:00 |
|