79 lines
2.2 KiB
Python
Executable File
79 lines
2.2 KiB
Python
Executable File
#!/usr/bin/env python
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import sys
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class SingleReaction:
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def __init__(self, reactants=None, inhibitors=None, products=None):
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self.reactants = set(reactants) if reactants is not None else set()
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self.inhibitors = set(inhibitors) if inhibitors is not None else set()
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self.products = set(products) if products is not None else set()
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def get_reactants(self):
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return "{" + ", ".join(self.reactants) + "}"
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def get_inhibitors(self):
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return "{" + ", ".join(self.inhibitors) + "}"
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def get_products(self):
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return "{" + ", ".join(self.products) + "}"
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def __str__(self):
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return "{" + f"{self.get_reactants()}, {self.get_inhibitors()} -> {self.get_products()}" + "};"
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class Reactions:
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def __init__(self):
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self.reactions = set()
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def add(self, reaction):
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self.reactions.add(reaction)
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def __str__(self):
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ret = ""
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for r in self.reactions:
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ret += f"{r}\n"
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return ret
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class DRSGenerator:
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def __init__(self, x, y, z):
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assert y >= z
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assert x >= 2 and y >= 2 and z >= 2
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self.x = x
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self.y = y
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self.z = z
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self.reactions = {}
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self.generate()
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def generate_reactions_for_component(self, i):
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self.reactions.setdefault(i, Reactions())
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rcts = self.reactions[i]
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rcts.add(SingleReaction(["GF"], ["h"], ["GF"]))
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rcts.add(SingleReaction(["GF"], ["h", f"RTK{i}"], ["RTK"]))
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rcts.add(SingleReaction(["RTK"], [f"ENi:1_{i}"], [f"EN:1_{i}"]))
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for j in range(1, self.x):
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rcts.add(SingleReaction([f"EN:{j}_{i}"], [f"ENi:{j+1}_{i}"], [f"EN:{j+1}_{i}"]))
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def generate(self):
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for i in range(1, self.y):
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self.generate_reactions_for_component(i)
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for proc, reactions in self.reactions.items():
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print(f"proc={proc}")
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print(reactions)
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def main():
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if len(sys.argv) < 1 + 2:
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print(f"Usage: {sys.argv[0]} <x> <y> <z>")
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print("\twhere x,y,z >= 2 and y >= z")
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sys.exit(1)
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g = DRSGenerator(x=int(sys.argv[1]), y=int(sys.argv[2]), z=int(sys.argv[3]))
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if __name__ == "__main__":
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main()
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