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Reaction system initialisation based on options.

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This commit is contained in:
Artur Meski
2018-02-25 19:47:00 +00:00
parent abdb53ffd5
commit f121ce12fd
15 changed files with 251 additions and 131 deletions
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26
rsin_parser.yy
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@@ -44,6 +44,7 @@ class rsin_driver;
#include "rsin_driver.hh"
}
%token OPTIONS USE_CTX_AUT USE_CONCENTRATIONS
%token REACTIONS INITIALCONTEXTS CONTEXTENTITIES RSCTLFORM
%token CONTEXTAUTOMATON STATES TRANSITIONS
%token LCB RCB LRB RRB LSB RSB LAB RAB COL SEMICOL COMMA RARR
@@ -75,6 +76,7 @@ class rsin_driver;
%start system;
system:
| OPTIONS LCB options RCB system
| REACTIONS LCB reactions RCB system
| INITIALCONTEXTS LCB initstates RCB system
| CONTEXTENTITIES LCB actionentities RCB system
@@ -84,6 +86,14 @@ system:
}
;
options:
| options option SEMICOL
;
option:
| USE_CTX_AUT { }
;
/*
* -------------------------
* REACTIONS
@@ -95,7 +105,7 @@ reactions:
reaction:
| LCB reactionConditions RARR LCB reactionProducts RCB RCB {
driver.rs->commitReaction();
driver.getReactionSystem()->commitReaction();
}
;
@@ -109,7 +119,7 @@ reactants:
;
reactant: IDENTIFIER {
driver.rs->pushReactant(*$1);
driver.getReactionSystem()->pushReactant(*$1);
free($1);
}
;
@@ -121,7 +131,7 @@ inhibitors:
inhibitor:
| IDENTIFIER {
driver.rs->pushInhibitor(*$1);
driver.getReactionSystem()->pushInhibitor(*$1);
free($1);
}
;
@@ -132,7 +142,7 @@ reactionProducts:
;
reactionProduct: IDENTIFIER {
driver.rs->pushProduct(*$1);
driver.getReactionSystem()->pushProduct(*$1);
free($1);
}
;
@@ -141,10 +151,10 @@ reactionProduct: IDENTIFIER {
initstates:
LCB initstate RCB {
driver.rs->commitInitState();
driver.getReactionSystem()->commitInitState();
}
| initstates COMMA LCB initstate RCB {
driver.rs->commitInitState();
driver.getReactionSystem()->commitInitState();
}
;
@@ -154,7 +164,7 @@ initstate:
;
entity: IDENTIFIER {
driver.rs->pushStateEntity(*$1);
driver.getReactionSystem()->pushStateEntity(*$1);
free($1);
}
;
@@ -167,7 +177,7 @@ actionentities:
;
actentity: IDENTIFIER {
driver.rs->addActionEntity(*$1);
driver.getReactionSystem()->addActionEntity(*$1);
free($1);
}
;