133 lines
3.2 KiB
C++
133 lines
3.2 KiB
C++
/*
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Copyright (c) 2012-2014
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Artur Meski <meski@ipipan.waw.pl>
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Reuse of the code or its part for any purpose
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without the author's permission is strictly prohibited.
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*/
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#ifndef RS_RS_HH
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#define RS_RS_HH
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#include <iostream>
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#include <set>
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#include <map>
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#include <vector>
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#include <string>
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#include <cstdlib>
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#include "macro.hh"
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#include "options.hh"
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#include "memtime.hh"
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using std::cout;
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using std::endl;
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class RctSys
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{
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friend class SymRS;
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friend class SymRSstate;
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public:
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typedef unsigned int Entity;
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typedef std::set<Entity> Entities;
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struct Reaction {
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Entities rctt;
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Entities inhib;
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Entities prod;
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};
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typedef std::vector<Reaction> Reactions;
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typedef std::vector<std::string> EntitiesByIds;
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typedef std::map<std::string, Entity> EntitiesByName;
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typedef std::set<Entities> EntitiesSets;
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private:
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Reactions reactions;
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EntitiesSets initStates;
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Entities actionEntities;
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EntitiesByIds entities_ids;
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EntitiesByName entities_names;
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Entities tmpReactants;
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Entities tmpInhibitors;
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Entities tmpProducts;
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Entities tmpState;
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Entity getEntityID(std::string entityName);
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Options *opts;
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public:
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void setOptions(Options *opts)
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{
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this->opts = opts;
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}
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bool hasEntity(std::string entityName);
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void addEntity(std::string entityName);
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std::string getEntityName(Entity entityID);
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void pushReactant(std::string entityName);
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void pushInhibitor(std::string entityName);
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void pushProduct(std::string entityName);
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void commitReaction(void);
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std::string entityToStr(const Entity entity) {
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return entities_ids[entity];
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}
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std::string entitiesToStr(const Entities &entities);
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void showReactions(void);
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void pushStateEntity(std::string entityName);
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void commitInitState(void);
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void addActionEntity(std::string entityName);
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bool isActionEntity(Entity entity);
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void resetInitStates(void) {
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initStates.clear();
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}
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unsigned int getEntitiesSize(void) {
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return entities_ids.size();
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}
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unsigned int getReactionsSize(void) {
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return reactions.size();
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}
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unsigned int getActionsSize(void) {
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return actionEntities.size();
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}
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void showInitialStates(void);
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void showActionEntities(void);
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void printSystem(void);
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};
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// Context Automaton
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class CtxAut
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{
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public:
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typedef unsigned int State;
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typedef std::vector<std::string> StatesById;
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typedef std::map<std::string, State> StatesByName;
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struct Transition {
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State src_state;
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RctSys::Entities ctx;
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State dst_state;
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};
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bool hasState(std::string name);
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void addState(std::string stateName);
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State getStateID(std::string name);
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void addTransition(std::string srcStateName, std::string dstStateName);
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void pushContextEntity(RctSys::Entity entity_id);
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void setOptions(Options *opts) { this->opts = opts; }
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private:
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Options *opts;
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StatesById states_ids;
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StatesByName states_names;
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RctSys::Entities tmpEntities;
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};
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class RctSysWithCtxAut : public RctSys
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{
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// friend class CtxAut;
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CtxAut ctx_aut;
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};
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#endif
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