from rs import * from smt import * import rs_examples from logics import * def run_tests(): # test_extended_automaton() # process() test_rsLTL() def test_rsLTL(): r = ReactionSystemWithConcentrations() r.add_bg_set_entity(("a",2)) r.add_bg_set_entity(("inc",2)) r.add_bg_set_entity(("dec",2)) r.add_bg_set_entity(("ent1",5)) r.add_bg_set_entity(("ent2",3)) r.add_bg_set_entity(("ent3",3)) c = ContextAutomatonWithConcentrations(r) c.add_init_state("init") c.add_state("working") c.add_transition("init", [("a",1),("inc",1)], "working") c.add_transition("working", [("inc",1)], "working") # x = ( Formula_rsLTL.f_X(BagDescription.f_TRUE(), Formula_rsLTL.f_bag( ~((BagDescription.f_entity("ent1") == 3) | (BagDescription.f_entity("ent2") < 3)) ) ) ) & Formula_rsLTL.f_X(BagDescription.f_TRUE(), Formula_rsLTL.f_bag( ~((BagDescription.f_entity("ent3") == 1) ) ) ) x = Formula_rsLTL.f_G((BagDescription.f_entity("inc") > 0), (BagDescription.f_entity("ent1") == 3) | (BagDescription.f_entity("ent2") < 3)) print(x) rc = ReactionSystemWithAutomaton(r,c) checker = SmtCheckerRSC(rc) checker.dummy_unroll(1000) e = Encoder_rsLTL(checker) print(e.encode(x, 0, 10)) def test_extended_automaton(): r = ReactionSystem() r.add_bg_set_entity("a") r.add_bg_set_entity("b") r.add_bg_set_entity("inc") r.add_bg_set_entity("dec") r.add_bg_set_entity("decx") r.add_bg_set_entity("baam") c1 = ExtendedContextAutomaton(r) c1.add_init_state("init") c1.name = "catest" c1.add_state("working") c1.add_action("act1") c1.add_action("act2") c1.add_transition("init", ["act1", "act2"], (["a"],["b"],["inc","dec"]), "working") c1.add_transition("working", ["act2"], ([],[],["inc"]), "working") c2 = ExtendedContextAutomaton(r) c2.add_init_state("init") c2.name = "c2" c2.add_state("working") c2.add_action("act1") c2.add_action("act2") c2.add_transition("init", ["act1", "act2"], ([],[],["inc"]), "working") c2.add_transition("working", ["act2"], ([],[],["inc"]), "working") c3 = ExtendedContextAutomaton(r) c3.add_init_state("init") c3.name = "c3" c3.add_state("working") c3.add_action("act1") c3.add_transition("init", ["act1"], ([],[],["inc"]), "working") c4 = ExtendedContextAutomaton(r) c4.add_init_state("init") c4.name = "c4" c4.add_state("w") c4.add_action("action_x") c4.add_transition("init", ["action_x"], ([],[],["baam"]), "w") # # c4 = ExtendedContextAutomaton(r) # c4.add_init_state("init") # c4.name = "c4" # c4.add_state("working") # c4.add_action("act1") # c4.add_action("act42") # c4.add_transition("init", ["act1", "act42"], ([],[],["inc"]), "working") # c4.add_transition("working", ["act42"], ([],[],["inc"]), "working") # # c5 = ExtendedContextAutomaton(r) # c5.add_init_state("init") # c5.name = "c5" # c5.add_state("working") # c5.add_action("act1") # c5.add_action("act2") # c5.add_transition("init", ["act1", "act2"], ([],[],["inc"]), "working") # c5.add_transition("working", ["act2"], ([],[],["inc"]), "working") na = NetworkOfContextAutomata(r, [c1,c2,c3,c4]) rna = ReactionSystemWithNetworkOfAutomata(r,na) rna.show() checker = SmtCheckerRSNA(rna) checker.check_reachability([]) def process(): # rs_examples.run_counter_exp() rs_examples.chain_reaction(print_system=True) # rs_examples.heat_shock_response() # RS: # rsca = rs_examples.ca_toy_ex1() # rsca.show() # smt = SmtCheckerRS(rsca) # smt.check_reachability(rs_examples.ca_toy_ex1_property1(), print_time=True) # rsca = rs_examples.ca_bitctr(N) # rsca.show(True) # smt = SmtCheckerRS(rsca) # smt.check_reachability(rs_examples.ca_bitctr_property(N), print_time=True) # Distributed RS: #drs = rs_examples.drs_mutex(N) #drs.show() #smt = SmtCheckerDistribRS(drs,debug_level=0) #smt.check_reachability(rs_examples.drs_mutex_property1(N), # exclusive_state=False, # max_level=10, # print_time=True, # print_mem=True) # drs = rs_examples.drs_toy_ex1() # drs.show() # # smt = SmtCheckerDistribRS(drs,debug_level=3) # smt.check_reachability(rs_examples.drs_toy_ex1_property1(),max_level=10,print_time=True)