Artur Meski
781777ac56
Production of the maximal concentration
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When multiple reactions are enabled, we produce the maximal concentration by exploiting the fact that reactions are sorted (increasing order). We build the encoding starting from the inner-most reaction (with the lowest concentration level), and then build around that reaction encoding for the reactions with higher concentration levels. This allows us to avoid the disjunctions of possible resulting concentractions. E.g. (x==1 v x==3 v x==7), while we should have only x==7.
2016-03-10 12:33:32 +01:00
Artur Meski
dc482781e2
Output cosmetics
2016-03-04 20:52:02 +01:00
Artur Meski
45b6db12c4
Pretty printing
2016-03-04 15:10:10 +01:00
Artur Meski
5aec7d8df5
HSR + cosmetics
2016-03-03 16:11:09 +01:00
Artur Meski
ec8e5d1b7d
Fixed permanency encoding: And->Or.
2016-03-03 14:35:47 +01:00
Artur Meski
7907c0216b
Added the enc_state_with_blocking() function
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This allows to specify reactants and inhibitors in the provided state.
2016-03-03 12:31:12 +01:00
Artur Meski
063e8063cc
Moved "Next level?" to after we check max_level
2016-03-03 06:54:41 +01:00
Artur Meski
1746bf86c8
still trying with glucose assimilation...
2016-03-02 22:12:50 +01:00
Artur Meski
02606e32bf
Permanency encoding. Allows preserving concentration levels for a specified entity. Permanency can also be inhibited.
2016-03-02 18:09:07 +01:00
Artur Meski
3f3690c861
working on Blood-Glucose example
2016-03-01 21:25:34 +01:00
Artur Meski
0137a20867
simplify
2016-02-29 08:35:49 +01:00
Artur Meski
ef6f2edd33
Incrementation & decrementation by a specified value.
2016-02-28 20:12:43 +01:00
Artur Meski
8a739b0760
Resources reporting. Chain reaction benchmark, etc.
2016-02-24 22:49:40 +01:00
Artur Meski
b21a0cee48
Translation RSC->RS for meta-reactions.
2016-02-21 14:55:48 +01:00
Artur Meski
060f5dc1f5
Meta-reactions
2016-02-20 23:35:08 +01:00
Artur Meski
1f5938ba96
Translation RSC -> RS. CA translation - to be done.
2016-02-19 18:19:50 +01:00
Artur Meski
9e025c2c9a
Implementation of reachability testing for RSC using SMT. Intitially tested version. No known issues.
2016-02-17 21:41:43 +01:00
Artur Meski
8853589ff8
Transitioning boolean variables to integer variables in the SMT encoding.
2016-02-16 21:57:55 +01:00
Artur Meski
6018df00d8
SMT for RSC. Initial commit with the stub class.
2016-02-16 20:34:17 +01:00
