diff --git a/rs/reaction_system_with_concentrations_param.py b/rs/reaction_system_with_concentrations_param.py index 4ed6726..d414e69 100644 --- a/rs/reaction_system_with_concentrations_param.py +++ b/rs/reaction_system_with_concentrations_param.py @@ -284,52 +284,6 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem): return producible_entities - def get_reactions_by_product(self): - """Sorts reactions by their products and returns a dictionary of products""" - - # assert False - - if self.reactions_by_prod != None: - return self.reactions_by_prod - - producible_entities = self.get_producible_entities() - - reactions_by_prod = {} - - for p_e in producible_entities: - reactions_by_prod[p_e] = [] - rcts_for_p_e = reactions_by_prod[p_e] - - for r in self.reactions: - product_entities = [e for e,c in r[2]] - - if p_e in product_entities: - reactants = r[0] - inhibitors = r[1] - products = [(e,c) for e,c in r[2] if e == p_e] - - prod_conc = products[0][1] - insert_place = None - - # we need to order the reactions w.r.t. the concentration levels produced (increasing order) - for i in range(0,len(rcts_for_p_e)): - - checked_conc = rcts_for_p_e[i][2][0][1] - if prod_conc <= checked_conc: - insert_place = i - break - - if insert_place == None: # empty or the is only one element which is smaller than the element being added - rcts_for_p_e.append((reactants, inhibitors, products)) # we append (to the end) - else: - rcts_for_p_e.insert(insert_place,(reactants, inhibitors, products)) - - - # save in cache - self.reactions_by_prod = reactions_by_prod - - return reactions_by_prod - def get_reaction_system(self): """ Translates RSC into RS