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parameters - z3... variables

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Artur Meski
2017-09-14 22:25:21 +01:00
parent 58d65453b6
commit f7cfeb43c1
3 changed files with 55 additions and 14 deletions
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2
rs/__init__.py
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@@ -2,7 +2,7 @@ from rs.reaction_system import ReactionSystem
from rs.context_automaton import ContextAutomaton
from rs.reaction_system_with_concentrations import ReactionSystemWithConcentrations
from rs.reaction_system_with_concentrations_param import ReactionSystemWithConcentrationsParam, ParameterObj
from rs.reaction_system_with_concentrations_param import ReactionSystemWithConcentrationsParam, ParameterObj, is_param
from rs.context_automaton_with_concentrations import ContextAutomatonWithConcentrations
from rs.extended_context_automaton import ExtendedContextAutomaton

18
rs/reaction_system_with_concentrations_param.py
View File

@@ -11,6 +11,9 @@ class ParameterObj(object):
def __repr__(self):
return "@{0}".format(self.name)
def is_param(some_object):
if isinstance(some_object, ParameterObj):
return True
class ReactionSystemWithConcentrationsParam(ReactionSystem):
@@ -251,9 +254,21 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
" ) Command=( " + self.get_entity_name(command) + " ) ] -- ( R={" + self.state_to_str(reactants) + "}, I={" + self.state_to_str(inhibitors) + "} )")
else:
raise RuntimeError("Unknown meta-reaction type: " + repr(r_type))
def show_param_reactions(self, soft=False):
print(C_MARK_INFO + " Parametric reactions:")
if soft and len(self.parametric_reactions) > 50:
print(" -> there are more than 50 reactions (" + str(len(self.parametric_reactions)) + ")")
else:
print(" "*4 + "{0: ^35}{1: ^25}{2: ^15}".format("reactants"," inhibitors"," products"))
for reactants,inhibitors,products in self.parametric_reactions:
print(" " + "- {0: ^35}{1: ^25}{2: ^15}".format(
"{ " + self.state_to_str(reactants) + " }",
" { " + self.state_to_str(inhibitors) + " }",
" { " + self.state_to_str(products) + " }"))
def show_max_concentrations(self):
print(C_MARK_INFO + " Maximal allowed concentration levels (for optimized translation to RS):")
print(C_MARK_INFO + " Maximal allowed concentration levels:")
for e,max_conc in self.max_conc_per_ent.items():
print(" - {0:^20} = {1:<6}".format(self.get_entity_name(e),max_conc))
@@ -265,6 +280,7 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
def show(self, soft=False):
self.show_background_set()
self.show_reactions(soft)
self.show_param_reactions(soft)
self.show_permanent_entities()
self.show_meta_reactions()
self.show_max_concentrations()