network of automata

rs/__init__.py

@@ -8,3 +8,4 @@ from rs.extended_context_automaton import ExtendedContextAutomaton
 
 from rs.network_of_context_automata import NetworkOfContextAutomata
 from rs.reaction_system_with_automaton import ReactionSystemWithAutomaton
+from rs.reaction_system_with_autnet import ReactionSystemWithNetworkOfAutomata

rs/reaction_system_with_autnet.py

@@ -0,0 +1,11 @@
+
+class ReactionSystemWithNetworkOfAutomata(object):
+    
+    def __init__(self, reaction_system, context_automata):
+        self.rs = reaction_system
+        self.cas = context_automata
+
+    def show(self, soft=False):
+        self.rs.show(soft)
+        self.cas.show()
+        

rs/reaction_system_with_automaton.py

@@ -1,9 +1,5 @@
-from sys import exit
-from colour import *
-
 from rs.reaction_system_with_concentrations import ReactionSystemWithConcentrations
 from rs.context_automaton_with_concentrations import ContextAutomatonWithConcentrations
-from rs.network_of_context_automata import NetworkOfContextAutomata
 
 class ReactionSystemWithAutomaton(object):
     

rs_testing.py

@@ -4,8 +4,8 @@ import rs_examples
 
 def run_tests():
     
-    # test_extended_automaton()
-    process()
+    test_extended_automaton()
+    # process()
 
 def test_extended_automaton():
     
@@ -33,11 +33,11 @@ def test_extended_automaton():
 
     na = NetworkOfContextAutomata([c1,c2])
 
-    rna = ReactionSystemWithAutomaton(r,na)
+    rna = ReactionSystemWithNetworkOfAutomata(r,na)
 
     rna.show()
     
-    checker = SmtCheckerRS(rna)
+    checker = SmtCheckerRSNA(rna)
     
 
 def process():

smt/smt_checker_rs_na.py

@@ -10,12 +10,10 @@ import resource
 class SmtCheckerRSNA(object):
     """SMT-based Model Checking for Reaction Systems with Network of Automata"""
 
-    def __init__(self, rsca):
+    def __init__(self, reaction_system_with_netaut):
         
-        rsca.sanity_check()
-        
-        self.rs = rsca.rs
-        self.ca = rsca.ca        
+        self.rs = reaction_system_with_netaut.rs
+        self.ca = reaction_system_with_netaut.cas
 
         self.v = []
         self.v_ctx = []