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Output cosmetics

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Artur Meski
2016-03-04 20:52:02 +01:00
parent 45b6db12c4
commit dc482781e2
2 changed files with 24 additions and 41 deletions
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24
rctsys.py
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@@ -114,13 +114,13 @@ class ContextAutomaton(object):
str_transition = str(transition[0]) + " --( "
str_transition += self.context2str(transition[1])
str_transition += " )--> " + str(transition[2])
print("\t- " + str_transition)
print(" - " + str_transition)
def show_states(self):
init_state_name = self.get_init_state_name()
print("[*] Context automaton states:")
for state in self._states:
print("\t- " + state, end="")
print(" - " + state, end="")
if state == init_state_name:
print(" [init]")
else:
@@ -309,10 +309,14 @@ class ReactionSystem(object):
def show_reactions(self, soft=False):
print("[*] Reactions:")
if soft and len(self.reactions) > 50:
print("\t -> there are more than 50 reactions (" + str(len(self.reactions)) + ")")
print(" -> there are more than 50 reactions (" + str(len(self.reactions)) + ")")
else:
print(" "*4 + "{0: ^35}{1: ^25}{2: ^15}".format("reactants"," inhibitors"," products"))
for reaction in self.reactions:
print("\t - ( R={" + self.state_to_str(reaction[0]) + "}, \tI={" + self.state_to_str(reaction[1]) + "}, \tP={" + self.state_to_str(reaction[2]) + "} )")
# print("\t( R={" + self.state_to_str(reaction[0]) + "}, I={" + self.state_to_str(reaction[1]) + "}, P={" + self.state_to_str(reaction[2]) + "} )")
print(" "*2 + "- {0: ^35}{1: ^25}{2: ^15}".format("{ " + self.state_to_str(reaction[0]) + " }",
" { " + self.state_to_str(reaction[1]) + " }",
" { " + self.state_to_str(reaction[2]) + " }"))
def show_background_set(self):
print("[*] Background set: {" + self.entities_names_set_to_str(self.background_set) + "}")
@@ -321,7 +325,7 @@ class ReactionSystem(object):
if len(self.init_contexts) > 0:
print("[*] Initial context sets:")
for ctx in self.init_contexts:
print("\t - {" + self.entities_ids_set_to_str(ctx) + "}")
print(" - {" + self.entities_ids_set_to_str(ctx) + "}")
def show_context_entities(self):
if len(self.context_entities) > 0:
@@ -523,7 +527,7 @@ class ReactionSystemWithConcentrations(ReactionSystem):
def state_to_str(self, state):
s = ""
for ent,level in state:
s += str((self.get_entity_name(ent),level)) + ", "
s += self.get_entity_name(ent) + "=" + str(level) + ", "
s = s[:-2]
return s
@@ -535,20 +539,20 @@ class ReactionSystemWithConcentrations(ReactionSystem):
for param_ent,reactions in self.meta_reactions.items():
for r_type,command,reactants,inhibitors in reactions:
if r_type == "inc" or r_type == "dec":
print("\t - [ Type=" + repr(r_type) + " Operand=( " + self.get_entity_name(param_ent) + \
" ) Command=( " + self.get_entity_name(command) + " ) ] -- ( R={" + self.state_to_str(reactants) + "}, \tI={" + self.state_to_str(inhibitors) + "} )")
print(" - [ Type=" + repr(r_type) + " Operand=( " + self.get_entity_name(param_ent) + \
" ) Command=( " + self.get_entity_name(command) + " ) ] -- ( R={" + self.state_to_str(reactants) + "}, I={" + self.state_to_str(inhibitors) + "} )")
else:
raise RuntimeError("Unknown meta-reaction type: " + repr(r_type))
def show_max_concentrations(self):
print("[*] Maximal allowed concentration levels (for optimized translation to RS):")
for e,max_conc in self.max_conc_per_ent.items():
print("\t - {0:>20} = {1:<6}".format(self.get_entity_name(e),max_conc))
print(" - {0:^20} = {1:<6}".format(self.get_entity_name(e),max_conc))
def show_permanent_entities(self):
print("[*] Permanent entities:")
for e,inhibitors in self.permanent_entities.items():
print("\t - {0:>20}: {1:<6}".format(self.get_entity_name(e),"I={" + self.state_to_str(inhibitors) + "}"))
print(" - {0:^20}{1:<6}".format(self.get_entity_name(e) + ": ","I={" + self.state_to_str(inhibitors) + "}"))
def show(self, soft=False):
self.show_background_set()