cleanup

rs/reaction_system_with_concentrations_param.py

@@ -4,9 +4,11 @@ from colour import *
 from rs.reaction_system import ReactionSystem
 
 class ParameterSet(object):
+
     def __init__(self, name):
         self.name = name
 
+
 class ReactionSystemWithConcentrationsParam(ReactionSystem):
 
     def __init__(self):
@@ -29,7 +31,8 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
             name = e
             print("\nWARNING: no maximal concentration level specified for:", e, "\n")
         else:
-            raise RuntimeError("Bad entity type when adding background set element")
+            raise RuntimeError(
+                "Bad entity type when adding background set element")
 
         self.assume_not_in_bgset(name)
         self.background_set.append(name)
@@ -73,7 +76,8 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
 
     def has_non_zero_concentration(self, elem):
         if elem[1] < 1:
-            raise RuntimeError("Unexpected concentration level in state: " + str(elem))
+            raise RuntimeError(
+                "Unexpected concentration level in state: " + str(elem))
 
     def process_rip(self, R, I, P, ignore_empty_R=False):
         """Chcecks concentration levels and converts entities names into their ids"""