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cleanup

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Artur Meski
2017-09-03 15:13:23 +01:00
parent ac150b2744
commit a2dc2ec31f
1 changed files with 28 additions and 24 deletions
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8
rs/reaction_system_with_concentrations_param.py
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@@ -4,9 +4,11 @@ from colour import *
from rs.reaction_system import ReactionSystem from rs.reaction_system import ReactionSystem
class ParameterSet(object): class ParameterSet(object):
def __init__(self, name): def __init__(self, name):
self.name = name self.name = name
class ReactionSystemWithConcentrationsParam(ReactionSystem): class ReactionSystemWithConcentrationsParam(ReactionSystem):
def __init__(self): def __init__(self):
@@ -29,7 +31,8 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
name = e name = e
print("\nWARNING: no maximal concentration level specified for:", e, "\n") print("\nWARNING: no maximal concentration level specified for:", e, "\n")
else: else:
raise RuntimeError("Bad entity type when adding background set element") raise RuntimeError(
"Bad entity type when adding background set element")
self.assume_not_in_bgset(name) self.assume_not_in_bgset(name)
self.background_set.append(name) self.background_set.append(name)
@@ -73,7 +76,8 @@ class ReactionSystemWithConcentrationsParam(ReactionSystem):
def has_non_zero_concentration(self, elem): def has_non_zero_concentration(self, elem):
if elem[1] < 1: if elem[1] < 1:
raise RuntimeError("Unexpected concentration level in state: " + str(elem)) raise RuntimeError(
"Unexpected concentration level in state: " + str(elem))
def process_rip(self, R, I, P, ignore_empty_R=False): def process_rip(self, R, I, P, ignore_empty_R=False):
"""Chcecks concentration levels and converts entities names into their ids""" """Chcecks concentration levels and converts entities names into their ids"""