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reset & initialise methods for SMT Checker; fixed some typos for rsLTL

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Artur Meski
2017-03-12 23:33:04 +01:00
parent 05557440a0
commit 7f6ea619b2
4 changed files with 40 additions and 12 deletions
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26
rs_testing.py
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@@ -71,16 +71,28 @@ def heat_shock_response(print_system=True):
# prop_req = [("hsp:hsf",1),("hse",1),("prot",1)]
# prop_block = [("temp",stress_temp)]
prop_req = [ ("mfp",1) ]
prop_block = [ ]
prop = (prop_req,prop_block)
rs_prop = (state_translate_rsc2rs(prop_req),state_translate_rsc2rs(prop_block))
f_reach_mfp = Formula_rsLTL.f_F(BagDescription.f_TRUE(), (BagDescription.f_entity("mfp") > 0) )
# prop_req = [ ("mfp",1) ]
# prop_block = [ ]
# prop = (prop_req,prop_block)
# rs_prop = (state_translate_rsc2rs(prop_req),state_translate_rsc2rs(prop_block))
#
# f_reach_mfp = Formula_rsLTL.f_F(BagDescription.f_TRUE(), (BagDescription.f_entity("mfp") > 0) )
smt_rsc = SmtCheckerRSC(rc)
# (1) if we keep increasing the temperature the protein will eventually misfold
# f_mfp_when_heating = Formula_rsLTL.f_X(BagDescription.f_TRUE(),
# Formula_rsLTL.f_F(BagDescription.f_entity("heat") > 0, (BagDescription.f_entity("mfp") > 0) )
# )
# smt_rsc.check_rsltl(formula=f_mfp_when_heating)
# (2) when heating, we finally exceed the stress_temp
f_2 = Formula_rsLTL.f_X(BagDescription.f_TRUE(),
Formula_rsLTL.f_F(BagDescription.f_entity("heat") > 0, (BagDescription.f_entity("temp") > stress_temp))
)
smt_rsc.check_rsltl(formula=f_2)
# smt_rsc.check_reachability(prop,max_level=40)
smt_rsc.check_rsltl(formula=f_reach_mfp)
def state_translate_rsc2rs(p):
return [e[0] + "#" + str(e[1]) for e in p]