adding support for network of automata...

rs/__init__.py

@@ -8,3 +8,4 @@ from rs.reaction_system_with_automaton import ReactionSystemWithAutomaton
 
 from rs.extended_context_automaton import ExtendedContextAutomaton
 
+from rs.network_of_context_automata import NetworkOfContextAutomata

rs/context_automaton.py

@@ -8,6 +8,7 @@ class ContextAutomaton(object):
         self._transitions = []
         self._init_state = None
         self._reaction_system = reaction_system
+        self._name = ""
     
     @property
     def states(self):
@@ -17,6 +18,14 @@ class ContextAutomaton(object):
     def transitions(self):
         return self._transitions
     
+    @property
+    def name(self):
+        return self._name
+    
+    @name.setter
+    def name(self, automaton_name):
+        self._name = automaton_name
+        
     def add_state(self, name):
         if name not in self._states:
             self._states.append(name)
@@ -126,7 +135,13 @@ class ContextAutomaton(object):
             else:
                 print()
 
+    def show_header(self):
+        if self.name:
+            name_string = ": " + colour_str(C_BOLD, self.name)
+            print(C_MARK_INFO + " Context automaton" + name_string)       
+
     def show(self):
+        self.show_header()
         self.show_states()
         self.show_transitions()
 

rs/extended_context_automaton.py

@@ -97,6 +97,5 @@ class ExtendedContextAutomaton(ContextAutomaton):
             print(" - " + act + " (id=" + str(self.get_action_id(act)) + ")")
     
     def show(self):
-        self.show_states()
+        super(ExtendedContextAutomaton, self).show()
         self.show_actions()
-        self.show_transitions()

rs/network_of_context_automata.py

@@ -0,0 +1,14 @@
+from sys import exit
+
+class NetworkOfContextAutomata(object):
+    
+    def __init__(self, context_automata):
+        self.cas = list(context_automata)
+
+    def show(self):
+        for ca in self.cas:
+            print()
+            ca.show()
+
+    def add(self, aut):
+        self.cas.append(aut)

rs/reaction_system_with_automaton.py

@@ -3,6 +3,7 @@ from colour import *
 
 from rs.reaction_system_with_concentrations import ReactionSystemWithConcentrations
 from rs.context_automaton_with_concentrations import ContextAutomatonWithConcentrations
+from rs.network_of_context_automata import NetworkOfContextAutomata
 
 class ReactionSystemWithAutomaton(object):
     

rs_testing.py

@@ -12,15 +12,27 @@ def test_extended_automaton():
     r.add_bg_set_entity("inc")
     r.add_bg_set_entity("dec")
 
-    c = ExtendedContextAutomaton(r)
-    c.add_init_state("init")
-    c.add_state("working")
-    c.add_action("act1")
-    c.add_action("act2")
-    c.add_transition("init", ["act1", "act2"], ([],[],["inc"]), "working")
-    c.add_transition("working", ["act2"], ([],[],["inc"]), "working")
+    c1 = ExtendedContextAutomaton(r)
+    c1.add_init_state("init")
+    c1.name = "catest"
+    c1.add_state("working")
+    c1.add_action("act1")
+    c1.add_action("act2")
+    c1.add_transition("init", ["act1", "act2"], ([],[],["inc"]), "working")
+    c1.add_transition("working", ["act2"], ([],[],["inc"]), "working")
 
-    rc = ReactionSystemWithAutomaton(r,c)
+    c2 = ExtendedContextAutomaton(r)
+    c2.add_init_state("init")
+    c2.name = "cxxxx"
+    c2.add_state("working")
+    c2.add_action("act1")
+    c2.add_action("act2")
+    c2.add_transition("init", ["act1", "act2"], ([],[],["inc"]), "working")
+    c2.add_transition("working", ["act2"], ([],[],["inc"]), "working")
+
+    na = NetworkOfContextAutomata([c1,c2])
+
+    rc = ReactionSystemWithAutomaton(r,na)
 
     rc.show()
 

rssmt.py

@@ -18,12 +18,16 @@ import resource
 
 profiling = False
 
+##################################################################    
+
 version = "2016/12/28/00"
 rsmc_banner = """Reaction Systems SMT-Based Model Checking
 
 Version: """ + version + """
 Author:  Artur Męski <meski@ipipan.waw.pl> / <artur.meski@ncl.ac.uk>"""
 
+##################################################################    
+
 def print_banner():
     print()
     for line in rsmc_banner.split("\n"):
@@ -33,11 +37,12 @@ def print_banner():
 ##################################################################    
 
 def main():
+    """Main function"""
     
     print_banner()
-    
     rs_testing.run_tests()
 
+##################################################################    
     
 if __name__ == "__main__":
     try: