cleanup

rs/context_automaton.py

@@ -1,6 +1,6 @@
 from sys import exit
 from colour import *
-
+        
 class ContextAutomaton(object):
     
     def __init__(self, reaction_system):

rs/context_automaton_with_concentrations.py

@@ -6,10 +6,7 @@ from rs.context_automaton import ContextAutomaton
 class ContextAutomatonWithConcentrations(ContextAutomaton):
 
     def __init__(self, reaction_system):
-        self._states = []
-        self._transitions = []
-        self._init_state = None
-        self._reaction_system = reaction_system
+        super(ContextAutomatonWithConcentrations, self).__init__(reaction_system)
     
     def is_valid_context(self, context):
         if set([e for e,lvl in context]).issubset(self._reaction_system.background_set):

rs_testing.py

@@ -1,10 +1,11 @@
 from rs import *
 from smt import *
+import rs_examples 
 
 def run_tests():
     
-    test_extended_automaton()
-    # process()
+    # test_extended_automaton()
+    process()
 
 def test_extended_automaton():
     

rssmt.py

@@ -21,10 +21,12 @@ profiling = False
 ##################################################################    
 
 version = "2016/12/28/00"
-rsmc_banner = """Reaction Systems SMT-Based Model Checking
+rsmc_banner = """
+Reaction Systems SMT-Based Model Checking
 
 Version: """ + version + """
-Author:  Artur Męski <meski@ipipan.waw.pl> / <artur.meski@ncl.ac.uk>"""
+Author:  Artur Męski <meski@ipipan.waw.pl> / <artur.meski@ncl.ac.uk>
+"""
 
 ##################################################################