rs package

rs/reaction_system_with_automaton.py

@@ -0,0 +1,36 @@
+from sys import exit
+from colour import *
+
+from rs.reaction_system_with_concentrations import ReactionSystemWithConcentrations
+from rs.context_automaton_with_concentrations import ContextAutomatonWithConcentrations
+
+class ReactionSystemWithAutomaton(object):
+    
+    def __init__(self, reaction_system, context_automaton):
+        self.rs = reaction_system
+        self.ca = context_automaton
+
+    def show(self, soft=False):
+        self.rs.show(soft)
+        self.ca.show()
+        
+    def is_with_concentrations(self):
+        if not isinstance(self.rs, ReactionSystemWithConcentrations):
+            return False
+        if not isinstance(self.ca, ContextAutomatonWithConcentrations):
+            return False
+        return True
+
+    def sanity_check(self):
+        pass
+        
+    def get_ordinary_reaction_system_with_automaton(self):
+        
+        if not self.is_with_concentrations():
+            raise RuntimeError("Not RS/CA with concentrations")
+        
+        ors = self.rs.get_reaction_system()
+        oca = self.ca.get_automaton_with_flat_contexts(ors)
+        
+        return ReactionSystemWithAutomaton(ors, oca)
+