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working on Blood-Glucose example

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Artur Meski
2016-03-01 21:25:34 +01:00
parent 0137a20867
commit 3f3690c861
8 changed files with 1891 additions and 18 deletions
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42
rs_examples.py
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@@ -388,26 +388,44 @@ def chain_reaction(print_system=False):
f.write(log_str)
f.close()
def blood_glucose_regulation():
def blood_glucose_regulation(print_system=True):
r = ReactionSystemWithConcentrations()
r.add_bg_set_entity(("inc_insulin",1))
r.add_bg_set_entity(("dec_insulin",1))
r.add_bg_set_entity(("inc_glycemia",1))
r.add_bg_set_entities(("inc_"))
r.add_bg_set_entities([(sugar,1),(aspartame,1),(glycemia,3),(glucagon,1),(insulin,2)])
r.add_bg_set_entity(("dec_glycemia",1))
r.add_bg_set_entity(("inc_glucagon",1))
r.add_bg_set_entities([("sugar",1),("aspartame",1),("glycemia",3),("glucagon",1),("insulin",2)])
# r.add_reaction([],[],[])
r.add_reaction([(sugar,1)],[],[(inc_insulin,1),(inc_glycemia,1)])
r.add_reaction([],[],[])
r.add_reaction([],[],[])
r.add_reaction([("sugar",1)],[],[("inc_insulin",1),("inc_glycemia",1)])
r.add_reaction([("aspartame",1)],[],[("insulin",1)])
r.add_reaction_without_reactants([],[("glycemia",1)],[("insulin",1)])
r.add_reaction([("glycemia",3)],[],[("insulin",1)])
r.add_reaction([("insulin",2)],[],[("dec_glycemia",1)])
r.add_reaction([("insulin",1),("glycemia",3)],[],[("dec_glycemia",1)])
r.add_reaction([("insulin",1)],[("glycemia",2)],[("dec_glycemia",1)])
r.add_reaction([("glucagon",1)],[],[("glycemia",1)])
# inc/dec:
r.add_reaction_inc("glycemia", "inc_glycemia", [],[("glycemia",3),("dec_glycemia",1)])
r.add_reaction_inc("glycemia", "dec_glycemia", [],[("glycemia",1),("inc_glycemia",1)])
# potrzebne sa reakcje, ktore utrzymaja okresolna molekule na tym samym poziomie
# -> przed podtrzymaniem trzeba sie upewnic, ze jednak jakas reakcja nie chce zmienic tego poziomu
# moje:
r.add_reaction([("sugar",1)],[],[("sugar",1)])
c = ContextAutomatonWithConcentrations(r)
c.add_init_state("init")
c.add_state("working")
c.add_transition("init", [("e_1",1),("inc",1)], "working")
c.add_transition("working", [("inc",1)], "working")
c.add_init_state("0")
c.add_state("1")
c.add_transition("0", [("sugar",1)], "1")
c.add_transition("1", [], "1")
# c.add_transition("1", [("sugar",1)], "1")
rc = ReactionSystemWithAutomaton(r,c)