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Easier formulae

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Artur Meski
2017-12-02 00:13:08 +00:00
parent 2c399dc5c1
commit 32d31f9fa1
6 changed files with 131 additions and 35 deletions
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35
rs_testing.py
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@@ -41,10 +41,21 @@ def gene_expression(cmd_args):
r.add_bg_set_entity(("h", 1))
r.add_bg_set_entity(("Q", 1))
r.add_bg_set_entity(("U", 1))
all_entities = set(r.background_set)
r.add_reaction([("x",1)],[("h",1)],[("x",1)])
r.add_reaction([("x",1)],[("h",1)],[("xp",1)])
r.add_reaction([("x",1),("xp",1)],[("h",1)],[("X",1)])
# r.add_reaction([("x",1)],[("h",1)],[("xp",1)])
param_p1 = r.get_param("P1")
r.add_reaction(param_p1,[("h",1)],[("xp",1)])
# r.add_reaction([("x",1),("xp",1)],[("h",1)],[("X",1)])
param_p2_r = r.get_param("P2_r")
param_p2_i = r.get_param("P2_i")
param_p2_p = r.get_param("P2_p")
r.add_reaction(param_p2_r,param_p2_i,param_p2_p)
r.add_reaction([("y",1)],[("h",1)],[("y",1)])
r.add_reaction([("y",1)],[("Q",1)],[("yp",1)])
r.add_reaction([("y",1),("yp",1)],[("h",1)],[("Y",1)])
@@ -66,6 +77,22 @@ def gene_expression(cmd_args):
rc = ReactionSystemWithAutomaton(r, c)
rc.show()
f_x1 = ltl_G(True, ltl_Implies(
exact_state(["x"], all_entities),
ltl_X(bag_And(bag_Not("Y"), bag_Not("Z"), bag_Not("h")), exact_state(["x", "xp"], all_entities))))
f_x2 = ltl_G(True, ltl_Implies(
exact_state(["x", "xp"], all_entities),
ltl_X(bag_Not("h"), exact_state("X", all_entities))))
reach_xp = ltl_F(True, "xp")
reach_X = ltl_F(True, "X")
smt_rsc = SmtCheckerRSCParam(rc, optimise=cmd_args.optimise)
smt_rsc.check_rsltl(formulae_list=[f_x1, f_x2, reach_xp, reach_X])
# smt_rsc.check_rsltl(formula=f_x1, print_witness=True)
def trivial_param():
@@ -89,7 +116,7 @@ def trivial_param():
rc.show()
smt_rsc = SmtCheckerRSCParam(rc)
f1 = ltl_F(bag_entity("final") >= 1)
f1 = ltl_F(True, bag_entity("final") >= 1)
# f1 = Formula_rsLTL.f_F(
# BagDescription.f_TRUE(),
@@ -207,7 +234,7 @@ def heat_shock_response_param(cmd_args, print_system=True):
#
# f_reach_mfp = Formula_rsLTL.f_F(BagDescription.f_TRUE(), (BagDescription.f_entity("mfp") > 0) )
f_reach_mfp = ltl_F(bag_entity("mfp") > 0)
f_reach_mfp = ltl_F(True, bag_entity("mfp") > 0)
f_reach_hspmfp = Formula_rsLTL.f_F(BagDescription.f_TRUE(), (BagDescription.f_entity("hsp:mfp") > 0) )