artur/reactics
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Examples, invocation script

Browse Source
This commit is contained in:
Artur Meski
2019-09-22 18:18:35 +01:00
parent f1122cafa2
commit 2166bc38f0
3 changed files with 71 additions and 12 deletions
Download Patch File Download Diff File Expand all files Collapse all files

21
smt_examples/chain_reaction.py → examples/smt/chain_reaction.py
View File

@@ -1,4 +1,25 @@
#!/usr/bin/env python
#
# Copyright (c) 2015-2019 Artur Meski
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
from rs import *
from smt import *

36
smt_examples/heat_shock_response.py → examples/smt/heat_shock_response.py Normal file → Executable file
View File

@@ -1,4 +1,25 @@
#!/usr/bin/env python
#
# Copyright (c) 2015-2019 Artur Meski
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
from rs import *
from smt import *
@@ -9,9 +30,11 @@ import resource
def heat_shock_response(print_system=True, verify_rsc=True):
if len(sys.argv) < 1+1:
print("provide B")
print(" B=1 - RSC")
print(" B=0 - Translated RSC into RS")
print("{source} <type>".format(source=sys.argv[0]))
print("type:")
print(" - 1 -- RSC")
print(" - 0 -- RSC translated into RS")
print()
exit(1)
verify_rsc=bool(int(sys.argv[1]))
@@ -58,27 +81,20 @@ def heat_shock_response(print_system=True,verify_rsc=True):
r.add_reaction_dec("temp", "cool", [("temp",1)],[])
r.add_permanency("temp",[("heat",1),("cool",1)])
#r.add_permanency("temp",[])
c = ContextAutomatonWithConcentrations(r)
c.add_init_state("0")
c.add_state("1")
# c.add_transition("0", [("prot",1), ("temp",35)], "1")
c.add_transition("0", [("hsf",1),("prot",1),("hse",1),("temp",35)], "1")
#-> c.add_transition("0", [("hse",1),("prot",1),("hsp:hsf",1),("temp",stress_temp)], "1")
# c.add_transition("0", [("hsp",1),("prot",1),("hsf3:hse",1),("mfp",1),("hsp:mfp",1),("temp",30)], "1")
c.add_transition("1", [("cool",1)], "1")
c.add_transition("1", [("heat",1)], "1")
c.add_transition("1", [], "1")
# c.add_transition("1", [("sugar",1)], "1")
rc = ReactionSystemWithAutomaton(r,c)
if print_system:
rc.show()
# prop_req = [("hsp:hsf",1),("hse",1),("prot",1)]
# prop_block = [("temp",stress_temp)]
prop_req = [ ("mfp",1) ]
prop_block = [ ]
prop = (prop_req,prop_block)

24
reactics
View File

@@ -1,5 +1,27 @@
#!/bin/bash
#
# Copyright (c) 2019 Artur Meski
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
echo
echo " ------------------------------------------------"
echo " -- ReactICS -- Reaction Systems Model Checker --"
@@ -44,7 +66,7 @@ then
else
echo "Usage: $0 <mode>"
echo "Usage: $0 <mode> <module-specific parameters>"
echo
echo "mode:"
echo " - bdd -- uses BDD-based module"